Publications and other research outputs that have acknowledged the SI HPC by referencing or including the HPC's DOI somewhere in the output. If you find a mistake or omission on this page please contact thompsonk at si dot edu.
If you have used the SI HPC in your research, please use doi.org/10.25572/SIHPC to acknowledge or cite this shared resource.
citations below are listed by publication date (desc) and also available on Zotero.org
2024
Cotes-Perdomo, Andrea P., Alberto Sánchez-Vialas, Richard Thomas, Andrew Jenkins, and Juan E. Uribe. “New Insights into the Systematics of the Afrotropical Amblyomma Marmoreum Complex (Acari: Ixodidae) and the Genome of a Novel Rickettsia Africae Strain Using Morphological and Metagenomic Approaches.” Ticks and Tick-Borne Diseases 15, no. 3 (May 1, 2024): 102323. https://doi.org/10.1016/j.ttbdis.2024.102323.
Armstrong, Ellie E., Sarah B. Carey, Alex Harkess, Gabriele Zenato Lazzari, Katherine A. Solari, Jesús E. Maldonado, Robert C. Fleischer, et al. “Parameterizing Pantherinae: De Novo Mutation Rate Estimates from Panthera and Neofelis Pedigrees.” bioRxiv, April 10, 2024. https://doi.org/10.1101/2024.04.06.587788.
Schott, Ryan K, Matthew K Fujita, Jeffrey W Streicher, David J Gower, Kate N Thomas, Ellis R Loew, Abraham G Bamba Kaya, et al. “Diversity and Evolution of Frog Visual Opsins: Spectral Tuning and Adaptation to Distinct Light Environments.” Edited by Keith Crandall. Molecular Biology and Evolution 41, no. 4 (April 2, 2024): msae049. https://doi.org/10.1093/molbev/msae049.
Lao, Xiao-Lin, Ying Meng, Jue Wu, Jun Wen, and Ze-Long Nie. “Plastid Genomes Provide Insights into the Phylogeny and Chloroplast Evolution of the Paper Daisy Tribe Gnaphalieae (Asteraceae).” Gene 901 (April 2024): 148177. https://doi.org/10.1016/j.gene.2024.148177.
Uribe, Juan E., Samuel Kelava, Santiago Nava, Andrea P. Cotes-Perdomo, Lyda R. Castro, Fredy A. Rivera-Paéz, Silvia Perea, et al. “New Insights into the Molecular Phylogeny, Biogeographical History, and Diversification of Amblyomma Ticks (Acari: Ixodidae) Based on Mitogenomes and Nuclear Sequences.” Parasites & Vectors 17, no. 1 (March 18, 2024): 139. https://doi.org/10.1186/s13071-024-06131-w.
Gottscho, Andrew D., Daniel G. Mulcahy, Adam D. Leaché, Kevin de Queiroz, and Robert E. Lovich. “Population Genomics of Flat-Tailed Horned Lizards (Phrynosoma Mcallii) Informs Conservation and Management across a Fragmented Colorado Desert Landscape.” Molecular Ecology n/a, no. n/a (March 6, 2024): e17308. https://doi.org/10.1111/mec.17308.
Zhang, Lei, Ying Meng, Da Wang, Guan-Hao He, Jun-Ming Zhang, Jun Wen, and Ze-Long Nie. “Plastid Genome Data Provide New Insights into the Dynamic Evolution of the Tribe Ampelopsideae (Vitaceae).” BMC Genomics 25, no. 1 (March 5, 2024): 247. https://doi.org/10.1186/s12864-024-10149-w.
Zheng, Wen, Jing Liu, Wenqi Zhao, Zongyi Zhao, Zhiqiong Lan, and Jun Wen. “The Complete Chloroplast Genomes of Three Alismataceae Species, Including the Medicinally Important Alisma Orientale.” Mitochondrial DNA Part B 9, no. 3 (March 3, 2024): 385–89. https://doi.org/10.1080/23802359.2024.2320419.
Hall, Kirsten R., Huiqun Wang, Amir H. Souri, Xiong Liu, and Kelly Chance. “Ozone Anomalies in Dry Intrusions Associated With Atmospheric Rivers.” Journal of Geophysical Research: Atmospheres 129, no. 4 (February 28, 2024): e2023JD039949. https://doi.org/10.1029/2023JD039949.
Pyron, R. Alexander, Kyle A. O’Connell, Edward A. Myers, David A. Beamer, and Hector Baños. “Complex Hybridization in a Clade of Polytypic Salamanders (Plethodontidae: Desmognathus ) Uncovered by Estimating Higher-Level Phylogenetic Networks.” Preprint. Evolutionary Biology, January 30, 2024. https://doi.org/10.1101/2024.01.29.577868.
Abreu, Edson F, Joyce R Prado, Jesús E Maldonado, Don E Wilson, Alexandre R Percequillo, and Silvia E Pavan. “Quantitative Species Delimitation, Tests for Gene Flow, and Migration Models Uncover Complex, Recent Speciation in Tree Squirrels.” Preprint. Evolutionary Biology, January 5, 2024. https://doi.org/10.1101/2024.01.04.574244.
2023
Lin, Audrey T., Liz Hammond-Kaarremaa, Hsiao-Lei Liu, Chris Stantis, Iain McKechnie, Michael Pavel, Susan sa’hLa mitSa Pavel, et al. “The History of Coast Salish ‘Woolly Dogs’ Revealed by Ancient Genomics and Indigenous Knowledge.” Science 382, no. 6676 (December 15, 2023): 1303–8. https://doi.org/10.1126/science.adi6549.
Qing, Xue, Y. Miles Zhang, Sidi Sun, Mohammed Ahmed, Wen-Sui Lo, Wim Bert, Oleksandr Holovachov, and Hongmei Li. “Phylogenomic Insights into the Evolution and Origin of Nematoda.” Preprint. Genomics, December 14, 2023. https://doi.org/10.1101/2023.12.13.571554.
Mulder, Kevin P., Anna E. Savage, Brian Gratwicke, Joyce E. Longcore, Ed Bronikowski, Matthew Evans, Ana V. Longo, et al. “Sequence Capture Identifies Fastidious Chytrid Fungi Directly from Host Tissue.” Fungal Genetics and Biology, December 13, 2023, 103858. https://doi.org/10.1016/j.fgb.2023.103858.
Torres, Guillermo, Gail H Schaefer, Robert P Stefanik, David W Latham, Jeremy Jones, Cyprien Lanthermann, John D Monnier, et al. “Orbits and Dynamical Masses for the Active Hyades Multiple System HD 284163.” Monthly Notices of the Royal Astronomical Society, December 11, 2023, stad3803. https://doi.org/10.1093/mnras/stad3803.
Weinheimer, Alaina R., Frank O. Aylward, Matthieu Leray, and Jarrod J. Scott. “Contrasting Drivers of Abundant Phage and Prokaryotic Communities Revealed in Diverse Coastal Ecosystems.” ISME Communications 3, no. 1 (December 4, 2023): 1–10. https://doi.org/10.1038/s43705-023-00333-6.
De León, Luis F., Carlos F. Arias, Diana M. T. Sharpe, Víctor Bravo, Rigoberto González, Rüdiger Krahe, and Celestino Aguilar. “Unraveling the Complex Phylogeographic History of Freshwater Fishes in Lower Central America: A Study of the Electric Fish Brachyhypopomus Occidentalis.” Molecular Phylogenetics and Evolution 189 (December 1, 2023): 107941. https://doi.org/10.1016/j.ympev.2023.107941.
Przelomska, Natalia A. S., Rudy A. Diaz, Fabio Andrés Ávila, Gustavo A. Ballen, Rocío Cortés-B, Logan Kistler, Daniel H. Chitwood, et al. “Morphometrics and Phylogenomics of Coca ( Erythroxylum Spp.) Illuminate Its Reticulate Evolution, with Implications for Taxonomy.” Preprint. Plant Biology, November 29, 2023. https://doi.org/10.1101/2023.11.28.569066.
Pyron, R. Alexander, Anvith Kakkera, David A. Beamer, and Kyle A. O’Connell. “Discerning Structure versus Speciation in Phylogeographic Analysis of Seepage Salamanders ( Desmognathus Aeneus ) Using Demography, Environment, Geography, and Phenotype.” Molecular Ecology, November 28, 2023, mec.17219. https://doi.org/10.1111/mec.17219.
Qin, Yu-Qian, Chu-Yun Yang, Ze-Long Nie, Jun Wen, and Ying Meng. “Phylogenomics and Divergence Pattern of Polygonatum (Asparagaceae: Polygonateae) in the North Temperate Region.” Molecular Phylogenetics and Evolution, November 2023, 107962. https://doi.org/10.1016/j.ympev.2023.107962.
Jamieson, Alexandra, Alberto Carmagnini, Jo Howard-McCombe, Sean Doherty, Alexandra Hirons, Evangelos Dimopoulos, Audrey T. Lin, et al. “Limited Historical Admixture between European Wildcats and Domestic Cats.” Current Biology 33, no. 21 (November 6, 2023): 4751-4760.e14. https://doi.org/10.1016/j.cub.2023.08.031.
Li, Qin-Qin, Khasbagan, Zhi-Ping Zhang, Jun Wen, and Yan Yu. “Plastid Phylogenomics of the Tribe Potentilleae (Rosaceae).” Molecular Phylogenetics and Evolution, November 2, 2023, 107961. https://doi.org/10.1016/j.ympev.2023.107961.
Wang, Huiqun, Anthony D. Toigo, and Mark I. Richardson. “Simulated Atmospheric Response to Large‐Scale Dust Forcing and Implications for Martian Dust Storm Growth.” Journal of Geophysical Research: Planets 128, no. 10 (October 2023): e2023JE007956. https://doi.org/10.1029/2023JE007956.
Crego, Ramiro D., Haydée Hernández-Yáñez, Thomas Rabeil, Yves Hingrat, Peter Leimgruber, and Jared A. Stabach. “Non-Systematic Surveys Reveal Increases in Areas Occupied by Endangered and Data-Deficient Nubian Bustard.” Global Ecology and Conservation, October 2023, e02682. https://doi.org/10.1016/j.gecco.2023.e02682.
Castañeda-Rico, Susette, Lillian D. Parker, Evelyn Sánchez, Sheccid Rivas-Trasvina, Melissa T. R. Hawkins, Cody W. Edwards, and Jesús E. Maldonado. “Novel Genomic Resources Contribute to the Systematics of Threatened Arboreal Deer Mice of the Genus Habromys Hooper & Musser, 1964 (Cricetidae, Neotominae) within a Neotomine–Peromyscine Phylogeny.” ZooKeys 1179 (September 11, 2023): 157–68. https://doi.org/10.3897/zookeys.1179.108759.
Holland-Ashford, Tyler, Patrick Slane, Laura A. Lopez, Katie Auchettl, and Vinay Kashyap. “Estimating Ejecta Mass Ratios in Kepler’s Supernova Remnant: Global X-Ray Spectral Analysis Including Suzaku Systematics and Emitting Volume Uncertainties.” The Astrophysical Journal 955, no. 1 (September 1, 2023): 77. https://doi.org/10.3847/1538-4357/aced8d.
Shin, In-Gu, Jennifer C. Yee, Weicheng Zang, Hongjing Yang, Kyu-Ha Hwang, Cheongho Han, Andrew Gould, et al. “Systematic KMTNet Planetary Anomaly Search. IX. Complete Sample of 2016 Prime-Field Planets.” The Astronomical Journal 166, no. 3 (September 1, 2023): 104. https://doi.org/10.3847/1538-3881/ace96d.
Horowitz, Jeremy, Dennis M. Opresko, María Del P. González-García, and Andrea M. Quattrini. “Description of a New Species of Black Coral in the Family Aphanipathidae (Anthozoa, Antipatharia) from Puerto Rico.” ZooKeys 1173 (August 2, 2023): 97–110. https://doi.org/10.3897/zookeys.1173.104141.
Bak, Juseon, Xiong Liu, Kai Yang, Gonzalo Gonzalez Abad, Ewan O’Sullivan, Kelly Chance, and Cheol-Hee Kim. “An Improved OMI Ozone Profile Research Product Version 2.0 with Collection 4 L1b Data and Algorithm Updates.” Preprint. Gases/Remote Sensing/Data Processing and Information Retrieval, July 26, 2023. https://doi.org/10.5194/amt-2023-154.
Almeida, Eduardo A.B., Silas Bossert, Bryan N. Danforth, Diego S. Porto, Felipe V. Freitas, Charles C. Davis, Elizabeth A. Murray, et al. “The Evolutionary History of Bees in Time and Space.” Current Biology, July 2023, S0960982223009120. https://doi.org/10.1016/j.cub.2023.07.005.
Jacovich, Taylor, Daniel Patnaude, Patrick Slane, Carles Badenes, Shiu-Hang Lee, Shigehiro Nagataki, and Dan Milisavljevic. “Doppler Broadening and Line-of-Sight Effects in Core-Collapse Supernovae and Young Remnants.” The Astrophysical Journal 951, no. 1 (July 1, 2023): 57. https://doi.org/10.3847/1538-4357/acd0ad.
Wang, Huiqun, Gonzalo González Abad, Chris Chan Miller, Hyeong-Ahn Kwon, Caroline R. Nowlan, Zolal Ayazpour, Heesung Chong, et al. “Development of the MEaSUREs Blue Band Water Vapor Algorithm – Towards a Long-Term Data Record.” Preprint. Gases/Remote Sensing/Data Processing and Information Retrieval, June 27, 2023. https://doi.org/10.5194/amt-2023-66.
Talavera, Alicia, Ze-Long Nie, Zhi-Yao Ma, Gabriel Johnson, Stefanie M. Ickert-Bond, Elizabeth A. Zimmer, and Jun Wen. “Phylogenomic Analyses Using a New 1013-Gene Vitaceae Bait-Set Support Major Groups of North American Vitis.” Molecular Phylogenetics and Evolution, June 2023, 107866. https://doi.org/10.1016/j.ympev.2023.107866.
Chong, Heesung, Gonzalo González Abad, Caroline R. Nowlan, Christopher Chan Miller, Alfonso Saiz-Lopez, Rafael P. Fernandez, Hyeong-Ahn Kwon, et al. “Global Retrieval of Stratospheric and Tropospheric BrO Columns from OMPS-NM Onboard the Suomi-NPP Satellite.” Preprint. Gases/Remote Sensing/Data Processing and Information Retrieval, June 8, 2023. https://doi.org/10.5194/egusphere-2023-1163.
Nowlan, Caroline R., Gonzalo González Abad, Hyeong‐Ahn Kwon, Zolal Ayazpour, Christopher Chan Miller, Kelly Chance, Heesung Chong, et al. “Global Formaldehyde Products From the Ozone Mapping and Profiler Suite (OMPS) Nadir Mappers on Suomi NPP and NOAA‐20.” Earth and Space Science 10, no. 5 (May 2023): e2022EA002643. https://doi.org/10.1029/2022EA002643.
Kwon, H.‐A., G. González Abad, C. R. Nowlan, H. Chong, A. H. Souri, C. Vigouroux, A. Röhling, et al. “Validation of OMPS Suomi NPP and OMPS NOAA‐20 Formaldehyde Total Columns With NDACC FTIR Observations.” Earth and Space Science 10, no. 5 (May 2023): e2022EA002778. https://doi.org/10.1029/2022EA002778.
Gonzalez, Brett C., Vanessa L. González, Alejandro Martínez, Katrine Worsaae, and Karen J. Osborn. “A Transcriptome-Based Phylogeny for Polynoidae (Annelida: Aphroditiformia).” Molecular Phylogenetics and Evolution, May 2023, 107811. https://doi.org/10.1016/j.ympev.2023.107811.
Robillard, Alexander J., Michael G. Trizna, Morgan Ruiz‐Tafur, Edgard Leonardo Dávila Panduro, C. David de Santana, Alexander E. White, Rebecca B. Dikow, and Jessica L. Deichmann. “Application of a Deep Learning Image Classifier for Identification of Amazonian Fishes.” Ecology and Evolution 13, no. 5 (May 2023): e9987. https://doi.org/10.1002/ece3.9987.
Goulding, Tricia C., Ellen E. Strong, and Andrea M. Quattrini. “Target‐capture Probes for Phylogenomics of the Caenogastropoda.” Molecular Ecology Resources, April 9, 2023, 1755-0998.13793. https://doi.org/10.1111/1755-0998.13793.
Valente, Jonathon J., James W. Rivers, Zhiqiang Yang, S. Kim Nelson, Joseph M. Northrup, Daniel D. Roby, Carolyn B. Meyer, and Matthew G. Betts. “Fragmentation Effects on an Endangered Species across a Gradient from the Interior to Edge of Its Range.” Conservation Biology, April 6, 2023, cobi.14091. https://doi.org/10.1111/cobi.14091.
Su, Na, Richard G.J. Hodel, Xi Wang, Jun-Ru Wang, Si-Yu Xie, Chao-Xia Gui, Ling Zhang, et al. “Molecular Phylogeny and Inflorescence Evolution of Prunus (Rosaceae) Based on RAD-Seq and Genome Skimming Analyses.” Plant Diversity, April 2023, S2468265923000586. https://doi.org/10.1016/j.pld.2023.03.013.
Koenemann, Daniel M., Logan Kistler, and Janelle M. Burke. “A Plastome Phylogeny of Rumex (Polygonaceae) Illuminates the Divergent Evolutionary Histories of Docks and Sorrels.” Molecular Phylogenetics and Evolution, March 2023, 107755. https://doi.org/10.1016/j.ympev.2023.107755.
Dikow, Rebecca, Jenna T. B. Ekwealor, William J. B. Mattingly, Michael G. Trizna, Elizabeth Harmon, Torsten Dikow, Carlos F. Arias, et al. “Let the Records Show: Attribution of Scientific Credit in Natural History Collections.” International Journal of Plant Sciences, March 8, 2023, 724949. https://doi.org/10.1086/724949.
Evans, Simone A., Dennis F. Whigham, Ida Hartvig, and Melissa K. McCormick. “Hybridization in the Fringed Orchids: An Analysis of Species Boundaries in The Face of Gene Flow.” Diversity 15, no. 3 (March 7, 2023): 384. https://doi.org/10.3390/d15030384.
Nie, Ze‐Long, Richard Hodel, Zhi‐Yao Ma, Gabriel Johnson, Chen Ren, Ying Meng, Stefanie M. Ickert‐Bond, Xiu‐Qun Liu, Elizabeth Zimmer, and Jun Wen. “Climate‐influenced Boreotropical Survival and Rampant Introgressions Explain the Thriving of New World Grapes in the North Temperate Zone.” Journal of Integrative Plant Biology, February 11, 2023, jipb.13466. https://doi.org/10.1111/jipb.13466.
Collins, Katie S., Stewart M. Edie, and David Jablonski. “Convergence and Contingency in the Evolution of a Specialized Mode of Life: Multiple Origins and High Disparity of Rock-Boring Bivalves.” Proceedings of the Royal Society B: Biological Sciences 290, no. 1992 (February 8, 2023): 20221907. https://doi.org/10.1098/rspb.2022.1907.
Liu, Jing, Ze-Long Nie, Chen Ren, Chun Su, and Jun Wen. “Phylogenomics of Aralia Sect. Aralia (Araliaceae): Signals of Hybridization and Insights into Its Species Delimitations and Intercontinental Biogeography.” Molecular Phylogenetics and Evolution, February 2023, 107727. https://doi.org/10.1016/j.ympev.2023.107727.
Shen, Chengcai, John C. Raymond, and Nicholas A. Murphy. “Nonequilibrium Ionization Modeling of Petschek-Type Shocks in Reconnecting Current Sheets in Solar Eruptions.” The Astrophysical Journal 943, no. 2 (February 1, 2023): 111. https://doi.org/10.3847/1538-4357/aca6e7.
Kaganer, Alyssa W., Robert J. Ossiboff, Nicole I. Keith, Krysten L. Schuler, Pierre Comizzoli, Matthew P. Hare, Robert C. Fleischer, Brian Gratwicke, and Elizabeth M. Bunting. “Immune Priming Prior to Pathogen Exposure Sheds Light on the Relationship between Host, Microbiome and Pathogen in Disease.” Royal Society Open Science 10, no. 2 (February 2023): 220810. https://doi.org/10.1098/rsos.220810.
Cotes-Perdomo, Andrea P., Santiago Nava, Lyda R. Castro, Fredy A. Rivera-Paéz, Jesús A. Cortés-Vecino, and Juan E. Uribe. “Phylogenetic Relationships of the Amblyomma Cajennense Complex (Acari: Ixodidae) at Mitogenomic Resolution.” Ticks and Tick-Borne Diseases, January 2023, 102125. https://doi.org/10.1016/j.ttbdis.2023.102125.
Shin, In-Gu, Jennifer C. Yee, Andrew Gould, Kyu-Ha Hwang, Hongjing Yang, Ian A. Bond, Michael D. Albrow, et al. “Mass Production of 2021 KMTNet Microlensing Planets. III. Analysis of Three Giant Planets.” The Astronomical Journal 165, no. 1 (January 1, 2023): 8. https://doi.org/10.3847/1538-3881/ac9d93.
2022
Deng, Xi‐Ling, Paul B. Frandsen, Rebecca B. Dikow, Adrien Favre, Deep Narayan Shah, Ram Devi Tachamo Shah, Julio V. Schneider, Jacqueline Heckenhauer, and Steffen U. Pauls. “The Impact of Sequencing Depth and Relatedness of the Reference Genome in Population Genomic Studies: A Case Study with Two Caddisfly Species (Trichoptera, Rhyacophilidae, Himalopsyche ).” Ecology and Evolution 12, no. 12 (December 2022). https://doi.org/10.1002/ece3.9583.
Gotting, Kirsten, Daniel S. May, Jeffrey Sosa-Calvo, Lily Khadempour, Charlotte B. Francoeur, Aileen Berasategui, Margaret W. Thairu, et al. “Genomic Diversification of the Specialized Parasite of the Fungus-Growing Ant Symbiosis.” Proceedings of the National Academy of Sciences 119, no. 51 (December 20, 2022): e2213096119. https://doi.org/10.1073/pnas.2213096119.
Bursell, Madeline G., Rebecca B. Dikow, Henrique V. Figueiró, Olga Dudchenko, Joseph P. Flanagan, Erez Lieberman Aiden, Benoit Goossens, et al. “Whole Genome Analysis of Clouded Leopard Species Reveals an Ancient Divergence and Distinct Demographic Histories.” IScience, December 2022, 105647. https://doi.org/10.1016/j.isci.2022.105647.
Cove, Michael V., Valentine Herrmann, Daniel J. Herrera, Ben C. Augustine, D. T. Tyler Flockhart, and William J. McShea. “Counting the Capital’s Cats: Estimating Drivers of Abundance of Free‐roaming Cats with a Novel Hierarchical Model.” Ecological Applications, December 8, 2022. https://doi.org/10.1002/eap.2790.
Armstrong, Ellie E, and Michael G Campana. “RatesTools: A Nextflow Pipeline for Detecting de Novo Germline Mutations in Pedigree Sequence Data.” Edited by Inanc Birol. Bioinformatics, December 5, 2022, btac784. https://doi.org/10.1093/bioinformatics/btac784.
Torres, Guillermo, Gail H. Schaefer, John D. Monnier, Narsireddy Anugu, Claire L. Davies, Jacob Ennis, Christopher D. Farrington, et al. “The Orbits and Dynamical Masses of the Castor System.” The Astrophysical Journal 941, no. 1 (December 1, 2022): 8. https://doi.org/10.3847/1538-4357/ac9d8d.
Shen, Chengcai, Vanessa Polito, Katharine K. Reeves, Bin Chen, Sijie Yu, and Xiaoyan Xie. “Non-Thermal Broadening of IRIS Fe XXI Lines Caused by Turbulent Plasma Flows in the Magnetic Reconnection Region During Solar Eruptions,” 2022. https://doi.org/10.48550/ARXIV.2211.07428.
Castañeda-Rico, Susette, Cody W. Edwards, Melissa T. R. Hawkins, and Jesús E. Maldonado. “Museomics and the Holotype of a Critically Endangered Cricetid Rodent Provide Key Evidence of an Undescribed Genus.” Frontiers in Ecology and Evolution 10 (October 3, 2022): 930356. https://doi.org/10.3389/fevo.2022.930356.
McGruder, Chima D., Mercedes López-Morales, James Kirk, Néstor Espinoza, Benjamin V. Rackham, Munazza K. Alam, Natalie Allen, et al. “ACCESS: Confirmation of a Clear Atmosphere for WASP-96b and a Comparison of Light Curve Detrending Techniques.” The Astronomical Journal 164, no. 4 (October 1, 2022): 134. https://doi.org/10.3847/1538-3881/ac7f2e.
Amelkina, Olga, Andreia M. da Silva, Alexandre R. Silva, and Pierre Comizzoli. “Feline MicroRNAome in Ovary and Testis: Exploration of in-Silico MiRNA-MRNA Networks Involved in Gonadal Function and Cellular Stress Response.” Frontiers in Genetics 13 (September 26, 2022): 1009220. https://doi.org/10.3389/fgene.2022.1009220.
Méndez-Urbano, Freddy, Julio Andrés Sierra-Giraldo, Mónica M. Carlsen, Ghennie T. Rodríguez-Rey, and Natalia Castaño-Rubiano. “Anthurium Caldasii: A New Species of Araceae from Colombia and Its Phylogenetic Relationships with Other Black-Spathed Anthurium Species.” Brittonia, September 9, 2022. https://doi.org/10.1007/s12228-022-09722-y.
Nottingham, Andrew T., Jarrod J. Scott, Kristin Saltonstall, Kirk Broders, Maria Montero-Sanchez, Johann Püspök, Erland Bååth, and Patrick Meir. “Microbial Diversity Declines in Warmed Tropical Soil and Respiration Rise Exceed Predictions as Communities Adapt.” Nature Microbiology, September 5, 2022. https://doi.org/10.1038/s41564-022-01200-1.
Zhang, Y. Miles, Michael W. Gates, Paul E. Hanson, and Sergio Jansen-González. “Description of a Neotropical Gall Inducer on Araceae: Arastichus, Gen. Nov. (Hymenoptera, Eulophidae) and Two New Species.” Journal of Hymenoptera Research 92 (August 31, 2022): 145–72. https://doi.org/10.3897/jhr.92.85967.
Hawkins, Melissa T. R., Mary Faith C. Flores, Michael McGowen, and Arlo Hinckley. “A Comparative Analysis of Extraction Protocol Performance on Degraded Mammalian Museum Specimens.” Frontiers in Ecology and Evolution 10 (August 17, 2022): 984056. https://doi.org/10.3389/fevo.2022.984056.
Speer, Kelly A., Melissa T. R. Hawkins, Mary Faith C. Flores, Michael R. McGowen, Robert C. Fleischer, Jesús E. Maldonado, Michael G. Campana, and Carly R. Muletz-Wolz. “A Comparative Study of RNA Yields from Museum Specimens, Including an Optimized Protocol for Extracting RNA from Formalin-Fixed Specimens.” Frontiers in Ecology and Evolution 10 (August 2, 2022): 953131. https://doi.org/10.3389/fevo.2022.953131.
Abreu, Edson F., Silvia E. Pavan, Mirian T.N. Tsuchiya, Bryan S. McLean, Don E. Wilson, Alexandre R. Percequillo, and Jesús E. Maldonado. “Old Specimens for Old Branches: Assessing Effects of Sample Age in Resolving a Rapid Neotropical Radiation of Squirrels.” Molecular Phylogenetics and Evolution 175 (October 2022): 107576. https://doi.org/10.1016/j.ympev.2022.107576.
Uribe, Juan E, Vanessa L González, Iker Irisarri, Yasunori Kano, David G Herbert, Ellen E Strong, and M G Harasewych. “A Phylogenomic Backbone for Gastropod Molluscs.” Systematic Biology, June 29, 2022, syac045. https://doi.org/10.1093/sysbio/syac045.
Grant, Evan H. Campbell, Kevin P. Mulder, Adrianne B. Brand, Douglas B. Chambers, Addison H. Wynn, Grace Capshaw, Matthew L. Niemiller, et al. “Speciation with Gene Flow in a Narrow Endemic West Virginia Cave Salamander (Gyrinophilus Subterraneus).” Conservation Genetics, June 1, 2022. https://doi.org/10.1007/s10592-022-01445-7.
Valente, Jonathon J., Ruth E. Bennett, Camila Gómez, Nicholas J. Bayly, Robert A. Rice, Peter P. Marra, T. Brandt Ryder, and T. Scott Sillett. “Land-Sparing and Land-Sharing Provide Complementary Benefits for Conserving Avian Biodiversity in Coffee-Growing Landscapes.” Biological Conservation 270 (June 2022): 109568. https://doi.org/10.1016/j.biocon.2022.109568.
Kaganer, Alyssa W., G. Sean Stapleton, Elizabeth M. Bunting, and Matthew P. Hare. “Aquatic eDNA Can Advance Monitoring of a Small‐bodied Terrestrial Salamander and Amphibian Pathogen.” Environmental DNA, May 31, 2022, edn3.316. https://doi.org/10.1002/edn3.316.
Choi, Jinkyul, Daven K. Henze, Hansen Cao, Caroline R. Nowlan, Gonzalo González Abad, Hyeong‐Ahn Kwon, Hyung‐Min Lee, et al. “An Inversion Framework for Optimizing Non‐Methane VOC Emissions Using Remote Sensing and Airborne Observations in Northeast Asia During the KORUS‐AQ Field Campaign.” Journal of Geophysical Research: Atmospheres 127, no. 7 (April 16, 2022). https://doi.org/10.1029/2021JD035844.
Capo, Eric, Benjamin D. Peterson, Minjae Kim, Daniel S. Jones, Silvia G. Acinas, Marc Amyot, Stefan Bertilsson, et al. “A Consensus Protocol for the Recovery of Mercury Methylation Genes from Metagenomes.” Preprint. Microbiology, March 14, 2022. https://doi.org/10.1101/2022.03.14.484253.
Jasso-Martínez, Jovana M., Bernardo F. Santos, Alejandro Zaldívar-Riverón, Jose Fernandez-Triana, Barbara J. Sharanowski, Robin Richter, Jeremy R. Dettman, Bonnie B. Blaimer, Seán G. Brady, and Robert R. Kula. “Phylogenomics of Braconid Wasps (Hymenoptera, Braconidae) Sheds Light on Classification and the Evolution of Parasitoid Life History Traits.” Molecular Phylogenetics and Evolution, March 2022, 107452. https://doi.org/10.1016/j.ympev.2022.107452.
Segura-Trujillo, Cintya A, Sergio Ticul Álvarez-Castañeda, Susette Castañeda-Rico, and Jesús E Maldonado. “Taxonomic versus Ecological Prey Traits among Arthropodophagous Bats: Implications for Surveying Trophic Partitioning Patterns.” Edited by Ricardo Ojeda. Journal of Mammalogy, March 16, 2022, gyac027. https://doi.org/10.1093/jmammal/gyac027.
Sun, Kang, Mahdi Yousefi, Christopher Chan Miller, Kelly Chance, Gonzalo González Abad, Iouli E. Gordon, Xiong Liu, Ewan O’Sullivan, Christopher E. Sioris, and Steven C. Wofsy. “An Optimal Estimation-Based Retrieval of Upper Atmospheric Oxygen Airglow and Temperature from SCIAMACHY Limb Observations.” Preprint. Gases/Remote Sensing/Data Processing and Information Retrieval, March 15, 2022. https://doi.org/10.5194/amt-2022-52.
Liu, Bin‐Bin, Chen Ren, Myounghai Kwak, Richard G.J. Hodel, Chao Xu, Jian He, Wen‐Bin Zhou, et al. “Phylogenomic Conflict Analyses in the Apple Genus Malus s.l. Reveal Widespread Hybridization and Allopolyploidy Driving Diversification, with Insights into the Complex Biogeographic History in the Northern Hemisphere.” Journal of Integrative Plant Biology, March 11, 2022, jipb.13246. https://doi.org/10.1111/jipb.13246.
Canty, Steven W. J., John Paul Kennedy, Graeme Fox, Kenan Matterson, Vanessa L. González, Mayra L. Núñez-Vallecillo, Richard F. Preziosi, and Jennifer K. Rowntree. “Mangrove Diversity Is More than Fringe Deep.” Scientific Reports 12, no. 1 (February 2022): 1695. https://doi.org/10.1038/s41598-022-05847-y.
Finenko, Artem A., Bruno Bézard, Iouli E. Gordon, Daniil N. Chistikov, Sergei E. Lokshtanov, Sergey V. Petrov, and Andrey A. Vigasin. “Trajectory-Based Simulation of Far-Infrared Collision-Induced Absorption Profiles of CH 4 –N 2 for Modeling Titan’s Atmosphere.” The Astrophysical Journal Supplement Series 258, no. 2 (February 1, 2022): 33. https://doi.org/10.3847/1538-4365/ac36d3.
Shen, Chengcai, Bin Chen, Katharine K. Reeves, Sijie Yu, Vanessa Polito, and Xiaoyan Xie. “The Origin of Underdense Plasma Downflows Associated with Magnetic Reconnection in Solar Flares.” Nature Astronomy, January 27, 2022. https://doi.org/10.1038/s41550-021-01570-2.
Edie, Stewart M., Safia C. Khouja, Katie S. Collins, Nicholas M. A. Crouch, and David Jablonski. “Evolutionary Modularity, Integration and Disparity in an Accretionary Skeleton: Analysis of Venerid Bivalvia.” Proceedings of the Royal Society B: Biological Sciences 289, no. 1967 (January 26, 2022): 20211199. https://doi.org/10.1098/rspb.2021.1199.
Hodel, Richard G. J., Elizabeth A. Zimmer, Bin-Bin Liu, and Jun Wen. “Synthesis of Nuclear and Chloroplast Data Combined With Network Analyses Supports the Polyploid Origin of the Apple Tribe and the Hybrid Origin of the Maleae—Gillenieae Clade.” Frontiers in Plant Science 12 (January 25, 2022): 820997. https://doi.org/10.3389/fpls.2021.820997.
Hanisch, Priscila Elena, Jeffrey Sosa-Calvo, and Ted R Schultz. “The Last Piece of the Puzzle? Phylogenetic Position and Natural History of the Monotypic Fungus-Farming Ant Genus Paramycetophylax (Formicidae: Attini).” Edited by Gabriela P Camacho. Insect Systematics and Diversity 6, no. 1 (January 1, 2022): 11. https://doi.org/10.1093/isd/ixab029.
2021
Neves, Karen, Bernardo Santos, Ted Schultz, Dietrich Gotzek, Rodolfo C.R. Abreu, Giselda Durigan, and Heraldo L. Vasconcelos. “Woody Encroachment Affects Multiple Dimensions of Ant Diversity in a Neotropical Savanna.” Preprint. In Review, December 29, 2021. https://doi.org/10.21203/rs.3.rs-1103978/v1.
Bossert, Silas, Thomas J. Wood, Sébastien Patiny, Denis Michez, Eduardo A. B. Almeida, Robert L. Minckley, Laurence Packer, et al. “Phylogeny, Biogeography and Diversification of the Mining Bee Family Andrenidae.” Systematic Entomology, December 21, 2021, syen.12530. https://doi.org/10.1111/syen.12530.
Johnson, Maggie D., Jarrod J. Scott, Matthieu Leray, Noelle Lucey, Lucia M. Rodriguez Bravo, William L. Wied, and Andrew H. Altieri. “Rapid Ecosystem-Scale Consequences of Acute Deoxygenation on a Caribbean Coral Reef.” Nature Communications 12, no. 1 (December 2021): 4522. https://doi.org/10.1038/s41467-021-24777-3.
Myers, Edward A. “Genome-Wide Data Reveal Extensive Gene Flow during the Diversification of the Western Rattlesnakes (Viperidae: Crotalinae: Crotalus).” Molecular Phylogenetics and Evolution 165 (December 2021): 107313. https://doi.org/10.1016/j.ympev.2021.107313.
Shen, Chengcai, Bin Chen, Katharine K. Reeves, Sijie Yu, Vanessa Polito, and Xiaoyan Xie. “The Origin of Underdense Plasma Downflows Associated with Magnetic Reconnection in Solar Flares.” ArXiv:2111.11407 [Astro-Ph, Physics:Physics], November 22, 2021. http://arxiv.org/abs/2111.11407.
Mulder, Kevin.P., Lucía Alarcón-Ríos, Alfredo G. Nicieza, Robert C. Fleischer, Rayna C. Bell, and Guillermo Velo-Antón. “Independent Evolutionary Transitions to Pueriparity across Multiple Timescales in the Viviparous Genus Salamandra.” Molecular Phylogenetics and Evolution, November 2021, 107347. https://doi.org/10.1016/j.ympev.2021.107347.
Myers, Edward A, Daniel G Mulcahy, Bryan Falk, Kiyomi Johnson, Marina Carbi, and Kevin de Queiroz. “Interspecific Gene Flow and Mitochondrial Genome Capture During the Radiation of Jamaican Anolis Lizards (Squamata; Iguanidae).” Systematic Biology, November 4, 2021, syab089. https://doi.org/10.1093/sysbio/syab089.
Liu, Bin-Bin, Chen Ren, Myounghai Kwak, Richard G.J. Hodel, Chao Xu, Jian He, Wen-Bin Zhou, et al. “Phylogenomic Analyses in the Apple Genus Malus s.l. Reveal Widespread Hybridization and Allopolyploidy Driving the Diversifications, with Insights into the Complex Biogeographic History in the Northern Hemisphere.” Preprint. Evolutionary Biology, October 14, 2021. https://doi.org/10.1101/2021.10.12.464085.
Arias, Carlos F, Rebecca B Dikow, W Owen McMillan, and Luis F De Leon. “De Novo Genome Assembly of the Electric Fish Brachyhypopomus Occidentalis (Hypopomidae, Gymnotiformes).” Edited by Bonnie Fraser. Genome Biology and Evolution, September 28, 2021, evab223. https://doi.org/10.1093/gbe/evab223.
Simon, Marcelo F., J. Moises F Mendoza, Hsiao‐Lei Liu, Márcio Lacerda Lopes Martins, Sergei V. Drovetski, Natalia A. S. Przelomska, Hope Loiselle, et al. “Phylogenomic Analysis Points to a South American Origin of Manihot and Illuminates the Primary Gene Pool of Cassava.” New Phytologist, September 19, 2021, nph.17743. https://doi.org/10.1111/nph.17743.
Barrera, Corina A., Jeffrey Sosa‐Calvo, Ted R. Schultz, Christian Rabeling, and Maurício Bacci. “Phylogenomic Reconstruction Reveals New Insights into the Evolution and Biogeography of Atta Leaf‐cutting Ants (Hymenoptera: Formicidae).” Systematic Entomology, September 3, 2021, syen.12513. https://doi.org/10.1111/syen.12513.
Gainett, Guilherme, Vanessa L. González, Jesús A. Ballesteros, Emily V. W. Setton, Caitlin M. Baker, Leonardo Barolo Gargiulo, Carlos E. Santibáñez-López, Jonathan A. Coddington, and Prashant P. Sharma. “The Genome of a Daddy-Long-Legs (Opiliones) Illuminates the Evolution of Arachnid Appendages.” Proceedings of the Royal Society B: Biological Sciences 288, no. 1956 (August 11, 2021): 20211168. https://doi.org/10.1098/rspb.2021.1168.
Casey, Jordan M., Emma Ransome, Allen G. Collins, Angka Mahardini, Eka M. Kurniasih, Andrianus Sembiring, Nina M. D. Schiettekatte, et al. “DNA Metabarcoding Marker Choice Skews Perception of Marine Eukaryotic Biodiversity.” Environmental DNA, August 10, 2021, edn3.245. https://doi.org/10.1002/edn3.245.
Baloković, M., S. E. Cabral, L. Brenneman, and C. M. Urry. “Properties of the Obscuring Torus in NGC 1052 from Multiepoch Broadband X-Ray Spectroscopy.” The Astrophysical Journal 916, no. 2 (August 1, 2021): 90. https://doi.org/10.3847/1538-4357/abff4d.
Wang, Huiqun, and Gonzalo González Abad. “Cloud Masks Derived from the Mars Daily Global Maps and an Application to the Tropical Cloud Belt on Mars.” Geosciences 11, no. 8 (July 31, 2021): 324. https://doi.org/10.3390/geosciences11080324.
Kaganer, Alyssa W., Leah D. Nagel, Tess E. Youker‐Smith, Elizabeth M. Bunting, and Matthew P. Hare. “Environmental DNA‐derived Pathogen Gene Sequences Can Expand Surveillance When Pathogen Titers Are Decoupled in EDNA and Hosts.” Environmental DNA, July 22, 2021, edn3.240. https://doi.org/10.1002/edn3.240.
Vollmer, Nicole L., Patricia E. Rosel, Keith D. Mullin, Lori H. Schwacke, Lance P. Garrison, Brian C. Balmer, Kevin Barry, et al. “Assessing Common Bottlenose Dolphin ( Tursiops truncatus ) Population Structure in Mississippi Sound and Coastal Waters of the North Central Gulf of Mexico.” Aquatic Conservation: Marine and Freshwater Ecosystems, July 16, 2021, aqc.3668. https://doi.org/10.1002/aqc.3668.
Pappalardo, Paula, Allen G Collins, Katrina M Pagenkopp Lohan, Kate M Hanson, Sarit B Truskey, William Jaeckle, Cheryl Lewis Ames, et al. “The Role of Taxonomic Expertise in Interpretation of Metabarcoding Studies.” Edited by William Grant. ICES Journal of Marine Science, May 17, 2021, fsab082. https://doi.org/10.1093/icesjms/fsab082.
O’Connell, Kyle A., Ivan Prates, Lauren A. Scheinberg, Kevin P. Mulder, and Rayna C. Bell. “Speciation and Secondary Contact in a Fossorial Island Endemic, the São Tomé Caecilian.” Molecular Ecology, May 10, 2021, mec.15928. https://doi.org/10.1111/mec.15928.
Santos, Bernardo F., David B. Wahl, Pascal Rousse, Andrew M. R. Bennett, Robert Kula, and Seán G. Brady. “Phylogenomics of Ichneumoninae (Hymenoptera, Ichneumonidae) Reveals Pervasive Morphological Convergence and the Shortcomings of Previous Classifications.” Systematic Entomology, April 24, 2021, syen.12484. https://doi.org/10.1111/syen.12484.
Bak, Juseon, Xiong Liu, Robert Spurr, Kai Yang, Caroline R. Nowlan, Christopher Chan Miller, Gonzalo Gonzalez Abad, and Kelly Chance. “Radiative Transfer Acceleration Based on the Principal Component Analysis and Lookup Table of Corrections: Optimization and Application to UV Ozone Profile Retrievals.” Atmospheric Measurement Techniques 14, no. 4 (April 7, 2021): 2659–72. https://doi.org/10.5194/amt-14-2659-2021.
Videvall, Elin, Kristina L. Paxton, Michael G. Campana, Loren Cassin‐Sackett, Carter T. Atkinson, and Robert C. Fleischer. “Transcriptome Assembly and Differential Gene Expression of the Invasive Avian Malaria Parasite Plasmodium Relictum in Hawaiʻi.” Ecology and Evolution, March 27, 2021, ece3.7401. https://doi.org/10.1002/ece3.7401.
Venkatraman, Madhvi, Robert C Fleischer, and Mirian T N Tsuchiya. “Comparative Analysis of Annotation Pipelines Using the First Japanese White-Eye ( Zosterops Japonicus ) Genome.” Edited by Bonnie Fraser. Genome Biology and Evolution, March 24, 2021, evab063. https://doi.org/10.1093/gbe/evab063.
Souri, Amir H., Kelly Chance, Juseon Bak, Caroline R. Nowlan, Gonzalo González Abad, Yeonjin Jung, David C. Wong, Jingqiu Mao, and Xiong Liu. “Unraveling Pathways of Elevated Ozone Induced by the 2020 Lockdown in Europe by an Observationally Constrained Regional Model: Non-Linear Joint Inversion of NOx and VOC Emissions Using TROPOMI.” Preprint. Gases/Atmospheric Modelling/Troposphere/Chemistry (chemical composition and reactions), March 12, 2021. https://doi.org/10.5194/acp-2021-121.
G. J. Hodel, Richard, Elizabeth Zimmer, and Jun Wen. “A Phylogenomic Approach Resolves the Backbone of Prunus (Rosaceae) and Identifies Signals of Hybridization and Allopolyploidy.” Molecular Phylogenetics and Evolution, February 2021, 107118. https://doi.org/10.1016/j.ympev.2021.107118.
Schott, Ryan K, Rayna C Bell, Ellis R Loew, Kate N Thomas, David J Gower, Jeffrey W Streicher, and Matthew K Fujita. “Genomic and Spectral Visual Adaptation in Southern Leopard Frogs during the Ontogenetic Transition from Aquatic to Terrestrial Light Environments.” Preprint. Genomics, February 20, 2021. https://doi.org/10.1101/2021.02.19.432049.
Gainett, Guilherme, Vanessa L. González, Jesús A. Ballesteros, Emily V. W. Setton, Caitlin M. Baker, Leonardo Barolo Gargiulo, Carlos E. Santibáñez-López, Jonathan A. Coddington, and Prashant P. Sharma. “The Genome of a Daddy-Long-Legs (Opiliones) Illuminates the Evolution of Arachnid Appendages and Chelicerate Genome Architecture.” Preprint. Developmental Biology, January 12, 2021. https://doi.org/10.1101/2021.01.11.426205.
2020
Abreu Júnior, Edson Fiedler de. “Phylogenomics, Diversification, and Biogeography of Neotropical Squirrels (Sciurillinae and Sciurinae: Sciurini).” Doutorado em Ecologia Aplicada, Universidade de São Paulo, 2020. https://doi.org/10.11606/T.91.2020.tde-07012021-171352.
Roa-Varón, Adela, Rebecca B Dikow, Giorgio Carnevale, Luke Tornabene, Carole C Baldwin, Chenhong Li, and Eric J Hilton. “Confronting Sources of Systematic Error to Resolve Historically Contentious Relationships: A Case Study Using Gadiform Fishes (Teleostei, Paracanthopterygii, Gadiformes).” Systematic Biology, December 21, 2020, https://doi.org/10.1093/sysbio/syaa095.
Tsuchiya, Mirian T N, Rebecca B Dikow, Klaus-Peter Koepfli, Paul B Frandsen, Larry L Rockwood, and Jesús E Maldonado. “Whole Genome Sequencing of Procyonids Reveals Distinct Demographic Histories in Kinkajou ( Potos Flavus ) and Northern Raccoon ( Procyon Lotor ).” Edited by Bonnie Fraser. Genome Biology and Evolution, December 17, 2020, https://doi.org/10.1093/gbe/evaa255.
Fortuna-Perez, Ana Paula, Cristina Ribeiro Marinho, Mohammad Vatanparast, Wanderleia de Vargas, João Ricardo Vieira Iganci, Gwilym Peter Lewis, Elisa Silva Cândido, et al. “Secretory Structures of the Adesmia Clade (Leguminosae): Implications for Evolutionary Adaptation in Dry Environments.” Perspectives in Plant Ecology, Evolution and Systematics, December 2020, https://doi.org/10.1016/j.ppees.2020.125588.
Kistler, Logan, Heather B. Thakar, Amber M. VanDerwarker, Alejandra Domic, Anders Bergström, Richard J. George, Thomas K. Harper, Robin G. Allaby, Kenneth Hirth, and Douglas J. Kennett. “Archaeological Central American Maize Genomes Suggest Ancient Gene Flow from South America.” Proceedings of the National Academy of Sciences, December 14, 2020, https://doi.org/10.1073/pnas.2015560117.
Harbach, Laura M., Sofia P. Moschou, Cecilia Garraffo, Jeremy J. Drake, Julián D. Alvarado-Gómez, Ofer Cohen, and Federico Fraschetti. “Stellar Winds Drive Strong Variations in Exoplanet Evaporative Outflows and Transit Absorption Signatures.” ArXiv:2012.05922 [Astro-Ph, Physics:Physics], December 10, 2020. http://arxiv.org/abs/2012.05922.
Olsen, Lindsey K., Jacqueline Heckenhauer, John S. Sproul, Rebecca B. Dikow, Vanessa L. Gonzalez, Matthew P. Kweskin, Adam M. Taylor, et al. “Draft Genome Assemblies and Annotations of Agrypnia Vestita Walker, and Hesperophylax Magnus Banks Reveal Substantial Repetitive Element Expansion in Tube Case-Making Caddisflies (Insecta: Trichoptera).” Preprint. Genomics, November 17, 2020. https://doi.org/10.1101/2020.11.16.381806.
Cândido, Elisa Silva, Mohammad Vatanparast, Wanderleia de Vargas, Luísa M P A Bezerra, Gwilym P Lewis, Vidal F Mansano, André O Simões, et al. “Molecular Phylogenetic Insights into the Evolution of Eriosema (Fabaceae): A Recent Tropical Savanna-Adapted Genus.” Botanical Journal of the Linnean Society 194, no. 4 (November 12, 2020): 439–59. https://doi.org/10.1093/botlinnean/boaa059.
McDonough, Molly M., Adam W. Ferguson, Robert C. Dowler, Matthew E. Gompper, and Jesús E. Maldonado. “Phylogenomic Systematics of the Spotted Skunks (Carnivora, Mephitidae, Spilogale ): Additional Species Diversity and Pleistocene Climate Change as a Major Driver of Diversification.” Preprint. Evolutionary Biology, October 25, 2020. https://doi.org/10.1101/2020.10.23.353045.
Conway, E. K., Gordon, I. E., Tennyson, J., Polyansky, O. L., Yurchenko, S. N., and Chance, K. 2020. “A semi-empirical potential energy surface and line list for H216O extending into the near-ultraviolet.” Atmospheric Chemistry and Physics, 20:10015–10027. doi:10.5194/acp-20-10015-2020.
Souri, A. H., Nowlan, C. R., González Abad, G., Zhu, L., Blake, D. R., Fried, A., … Chance, K. 2020. “An inversion of NOx and non-methane volatile organic compound (NMVOC) emissions using satellite observations during the KORUS-AQ campaign and implications for surface ozone over East Asia.” Atmospheric Chemistry and Physics, 20:9837–9854. doi:10.5194/acp-20-9837-2020.
Moraes, A. P., Vatanparast, M., Polido, C., Marques, A., Souza, G., Fortuna-Perez, A. P., and Forni-Martins, E. R. 2020. “Chromosome number evolution in dalbergioid legumes (Papilionoideae, Leguminosae).” Brazilian Journal of Botany.
https://10.1007/s40415-020-00631-6.
Dommain, R., Andama, M., McDonough, M. M., Prado, N. A., Goldhammer, T., Potts, R., … Campana, M. G. 2020. “The Challenges of Reconstructing Tropical Biodiversity With Sedimentary Ancient DNA: A 2200-Year-Long Metagenomic Record From Bwindi Impenetrable Forest, Uganda.” Frontiers in Ecology and Evolution, 8:218. doi:10.3389/fevo.2020.00218.
Jacovich, T., Beniamini, P., and van der Horst, A. 2020. “Modeling Synchrotron Self-Compton and Klein-Nishina Effects in Gamma-Ray Burst Afterglows.” ArXiv:2007.04418 [Astro-Ph].
http://arxiv.org/abs/2007.04418.
White, A. E., R. B. Dikow, M. Baugh, A. Jenkins, and P. B. Frandsen. 2020. Generating segmentation masks of herbarium specimens and a data set for training segmentation models using deep learning. Applications in Plant Sciences 8(6): e11352
https://doi.org/10.1002/aps3.1135
de Abreu-Jr, E. F., Pavan, S. E., Tsuchiya, M. T., Wilson, D. E., Percequillo, A. R., and Maldonado, J. E. 2020. “Museomics of tree squirrels: A dense taxon sampling of mitogenomes reveals hidden diversity, phenotypic convergence, and the need of a taxonomic overhaul.”
doi:https://doi.org/10.1186/s12862-020-01639-y.
Menezes, R. S., Lloyd, M. W., and Brady, S. G. 2020. Phylogenomics indicates Amazonia as the major source of Neotropical swarm-founding social wasp diversity. Proceedings of the Royal Society B, 287:20200480.
https://doi.org/10.1098/rspb.2020.0480
Torres, G., Melis, C., Kraus, A. L., Dupuy, T. J., Chilcote, J. K., and Crepp, J. R. 2020. Dynamical masses for the Pleiades binary system HII-2147. ArXiv Preprint ArXiv:2006.06670.
Tsuchiya, M. T., Dikow, R. B., and Cassin-Sackett, L. 2020. First genome sequence of the Gunnison’s prairie dog (Cynomys gunnisoni), a keystone species and player in the transmission of sylvatic plague. Genome Biology and Evolution, 12:618–625.
https://doi.org/10.1093/gbe/evaa069
2019
2018
Tremblay, G. R., F. Combes, J. B. R. Oonk, H. R. Russell, M. A. McDonald, M. Gaspari, B. Husemann, et al. “A Galaxy-Scale Fountain of Cold Molecular Gas Pumped by a Black Hole.” The Astrophysical Journal 865, no. 1 (September 17, 2018): 13. https://doi.org/10.3847/1538-4357/aad6dd.