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Research Outputs from the SI High Performance Computing Cluster

Publications and other research outputs that have acknowledged the SI HPC by referencing or including the HPC's DOI somewhere in the output. If you find a mistake or omission on this page please notify si-rdm at

If you have used the SI HPC in your research please use to acknowledge or cite this shared resource.


citations below are listed by publication date (desc)

Moraes, A. P., Vatanparast, M., Polido, C., Marques, A., Souza, G., Fortuna-Perez, A. P., and Forni-Martins, E. R. 2020. “Chromosome number evolution in dalbergioid legumes (Papilionoideae, Leguminosae).” Brazilian Journal of Botany.

Dommain, R., Andama, M., McDonough, M. M., Prado, N. A., Goldhammer, T., Potts, R., … Campana, M. G. 2020. “The Challenges of Reconstructing Tropical Biodiversity With Sedimentary Ancient DNA: A 2200-Year-Long Metagenomic Record From Bwindi Impenetrable Forest, Uganda.” Frontiers in Ecology and Evolution, 8:218. doi:10.3389/fevo.2020.00218.

Jacovich, T., Beniamini, P., and van der Horst, A. 2020. “Modeling Synchrotron Self-Compton and Klein-Nishina Effects in Gamma-Ray Burst Afterglows.” ArXiv:2007.04418 [Astro-Ph].

White, A. E., R. B. Dikow, M. Baugh, A. Jenkins, and P. B. Frandsen. 2020. Generating segmentation masks of herbarium specimens and a data set for training segmentation models using deep learning. Applications in Plant Sciences 8(6): e11352

de Abreu-Jr, E. F., Pavan, S. E., Tsuchiya, M. T., Wilson, D. E., Percequillo, A. R., and Maldonado, J. E. 2020. “Museomics of tree squirrels: A dense taxon sampling of mitogenomes reveals hidden diversity, phenotypic convergence, and the need of a taxonomic overhaul.”

Menezes, R. S., Lloyd, M. W., and Brady, S. G. 2020. Phylogenomics indicates Amazonia as the major source of Neotropical swarm-founding social wasp diversity. Proceedings of the Royal Society B, 287:20200480.

Torres, G., Melis, C., Kraus, A. L., Dupuy, T. J., Chilcote, J. K., and Crepp, J. R. 2020. Dynamical masses for the Pleiades binary system HII-2147. ArXiv Preprint ArXiv:2006.06670.

Tsuchiya, M. T., Dikow, R. B., and Cassin-Sackett, L. 2020. First genome sequence of the Gunnison’s prairie dog (Cynomys gunnisoni), a keystone species and player in the transmission of sylvatic plague. Genome Biology and Evolution, 12:618–625.

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